PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011487
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 248aa    MW: 26462.7 Da    PI: 4.4428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011487genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-1680129155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f tae+Aa+a++ a+++l+g
  Cla011487  80 SLYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTAEMAAAAYDVAALALKG 129
                579***9.55.6*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-1780139No hitNo description
SuperFamilySSF541711.37E-1880139IPR016177DNA-binding domain
PfamPF008471.9E-981129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2781138IPR001471AP2/ERF domain
PROSITE profilePS5103220.28481137IPR001471AP2/ERF domain
SMARTSM003801.8E-2981143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADQKLQINE SQIDQSLHPP PPISKPIVID PFVPSVPTSQ NPNPKSQEGE GEQKQPNLPQ  60
QLPPLPPSSS MASSSTKKHS LYRGIRCRSG KWVSEIREPR KTTRIWLGTF PTAEMAAAAY  120
DVAALALKGG DAVLNFPSSL PTYPVPASTS PVDIRTAAST AAAATAANAL KKAASSTSPV  180
DVCTTEDSSN TTMGMEEFVD EEEIFGMPGL LADMAEGMMV SPPRINSPPL SDDSMENSDG  240
TESLWSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15791401275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143932.11e-106PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9CAN95e-52ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A0A0KKC41e-105A0A0A0KKC4_CUCSA; Uncharacterized protein
STRINGXP_004166984.11e-105(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-40ERF family protein