PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011389
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 293aa    MW: 32446.8 Da    PI: 4.5745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011389genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1989139155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Cla011389  89 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 139
                59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-3289146No hitNo description
SuperFamilySSF541719.81E-2290148IPR016177DNA-binding domain
PfamPF008471.7E-1290139IPR001471AP2/ERF domain
PROSITE profilePS5103223.57890147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3090148IPR001471AP2/ERF domain
SMARTSM003802.6E-3990153IPR001471AP2/ERF domain
PRINTSPR003672.9E-1091102IPR001471AP2/ERF domain
PRINTSPR003672.9E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MPEIRPRVVR ISVTDGDATD SSSDDESEMF GRHRVKKFVN EITIEPSCSG EGNGTWGLNR  60
SARTGLRRST GKCGVSSRNR RSAKVTPGKK FRGVRQRPWG KWAAEIRDPL RRVRLWLGTY  120
DTAEEAAMVY DNAAIQLRGP DALTNFTTQQ PKSFAGKCSG YNSGEESNNN ICSPTSVLRC  180
PSPPIEEAQS QIPGEPDNSC VSENFSSEFS DFSSCSDTFI PDDIFAFETS IPTLFDEMGL  240
QNQTNFFSND SFFNGVLHSP VEEIGFGFEY PPPPDDFFHD FSDVFGSDPL VAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2088146362ATERF1
3gcc_A1e-2088146362ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437369.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A1S3AUG20.0A0A1S3AUG2_CUCME; ethylene-responsive transcription factor CRF2-like
STRINGXP_008437369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.15e-42cytokinin response factor 3