PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011375
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 302aa    MW: 33120.2 Da    PI: 8.3372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011375genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18104153356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a++ a+ kl+ge
  Cla011375 104 YRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSPETAAYAYDCAACKLRGE 153
                9******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-20102162No hitNo description
PfamPF008475.9E-13103153IPR001471AP2/ERF domain
SMARTSM003803.8E-35103166IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22103160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-30103161IPR001471AP2/ERF domain
PROSITE profilePS5103222.234103160IPR001471AP2/ERF domain
PRINTSPR003671.1E-11104115IPR001471AP2/ERF domain
PRINTSPR003671.1E-11142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMNRPNLQFG LADVSTALSN LILTGGGNTL DSIFSHCENL ASVNDGRDFQ PAVGSSVYLQ  60
QREVLQRFSQ DRKSNGSRNL FSRAYELLYS RSGASVSGSE KKIYRGVRQR HWGKWVAEIR  120
LPQNRMRVWL GTYDSPETAA YAYDCAACKL RGEYARLNFP NLKDLKADLG SGEFARLSEL  180
KKLVDAKIQA IFQKIRKGKG KKSVKKDSQG AGGDLGSGSC SSSSSSVSLP PAAVELTDEW  240
SWENVQPPAT AEEGLWNFEN SPRGVSMDCA TATTVAGSET ECYSLAKMPS YDADLIWEVL  300
AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16102160463ATERF1
3gcc_A2e-16102160463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143870.11e-174PREDICTED: ethylene-responsive transcription factor ERF061-like
TrEMBLA0A0A0KMF61e-173A0A0A0KMF6_CUCSA; Uncharacterized protein
STRINGXP_004161458.11e-174(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.17e-47ERF family protein