PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla011343

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 276aa MW: 29562.9 Da PI: 7.7207

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla011343	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	44.8	2.5e-14	45	72	36	62
zf-Dof 36 C.rryWtkGGalrnvPvGggrrknkkss 62 C rryWt+GG+lrn+PvGgg+rknk+ s Cla011343 45 CpRRYWTEGGSLRNIPVGGGSRKNKRPS 72 549**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-9	33	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-9	45	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPSVSI LERKIRPQKE QALNCPRRYW TEGGSLRNIP 60 VGGGSRKNKR PSSSSSSTSP TPSSSQPIPK KILDLPQNPK STQDLNLFFP PSNHQDHHHF 120 ITNSHPEIVA PAIASSSSAS TVATAAVSSS PSAPSHHHPL SAMELLAGMA NNNNNNSRGL 180 NCFFPMSSVV VPDPAGSLYT VGFPDLHDQF KSNLGLFSLD GYSVVPTEGS KGGGRLMQLP 240 FEDLKQGSNG GVEQGKEQGE HNSSGYWNGM LGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437432.1	1e-112	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1S3AUK1	1e-111	A0A1S3AUK1_CUCME; dof zinc finger protein DOF4.6-like
STRING	XP_004143850.1	1e-109	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-28	Dof family protein