PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla011248

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 490aa MW: 54230.8 Da PI: 7.5

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla011248	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.7e-36	60	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgyWk 84 lp+G++F+Ptd+el+ e+L++kv++k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + +W+ Cla011248 60 LPAGVKFDPTDQELI-EHLEAKVQSKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWH 157 799**********.99*****5553344444434666646******.555666799**************73334555544778 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Cla011248 158 KTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 202 ********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-38	56	221	IPR003441	NAC domain
PROSITE profile	PS51005	33.226	60	221	IPR003441	NAC domain
Pfam	PF02365	2.2E-16	61	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MRNNSKIISS IVVGGGSSGG GGGGSDSLLD AKLEQHQMCG SKHCPGCGHK LEGRPDWVGL 60 PAGVKFDPTD QELIEHLEAK VQSKDMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG 120 LSRHFFHRPS KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMANGK QKGCKKILVL 180 YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS ERSLAAAEGS 240 FEVTNLSRRE ITATTTGSCS LMTQADDMSP AATAGAGCSI SSFSSLDIQQ HLKSDHFGFV 300 PFRTTFDEVG MEDSSVERKI GSKDGRGGGS GSGGGSGEFE LGDHHHQRTA ALDHHHHQLV 360 VAHNDHHHHH SVVNHHLPTT AFHVTNPTHQ ISTIISPPPL LLLDHNSYQH HHHHHHHSPI 420 ILQNQPFHQQ EEGESEHHKI GGRSASGLEE LIMGCTSSSI KHQPVSLSLS PLLLLLLLLY 480 KLKFIPNYTF

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MRNNSKIISS IVVGGGSSGG GGGGSDSLLD AKLEQHQMCG SKHCPGCGHK LEGRPDWVGL  60
PAGVKFDPTD QELIEHLEAK VQSKDMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG  120
LSRHFFHRPS KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMANGK QKGCKKILVL  180
YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS ERSLAAAEGS  240
FEVTNLSRRE ITATTTGSCS LMTQADDMSP AATAGAGCSI SSFSSLDIQQ HLKSDHFGFV  300
PFRTTFDEVG MEDSSVERKI GSKDGRGGGS GSGGGSGEFE LGDHHHQRTA ALDHHHHQLV  360
VAHNDHHHHH SVVNHHLPTT AFHVTNPTHQ ISTIISPPPL LLLDHNSYQH HHHHHHHSPI  420
ILQNQPFHQQ EEGESEHHKI GGRSASGLEE LIMGCTSSSI KHQPVSLSLS PLLLLLLLLY  480
KLKFIPNYTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450799.1	0.0	PREDICTED: NAC transcription factor NAM-A1-like
Swissprot	Q9M0F8	1e-154	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1S3BQR1	0.0	A0A1S3BQR1_CUCME; NAC transcription factor NAM-A1-like
STRING	XP_008450800.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-138	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]