PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011213
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 313aa    MW: 34083.1 Da    PI: 9.0932
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011213genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.51.1e-09186205120
       GATA   1 CsnCgttkTplWRrgpdgnk 20 
                Cs C+ttkTplWR+gp+g+k
  Cla011213 186 CSDCNTTKTPLWRSGPRGPK 205
                ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-5180221IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-5181204No hitNo description
Gene3DG3DSA:3.30.50.102.8E-6184203IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.46184203IPR000679Zinc finger, GATA-type
PfamPF003203.7E-7186205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAPPYRDSFP SDHNDLDLRY SSSHHLFFPI TPQPSSSSSS SLSFPALDHF NSHDPRPLEL  60
ENKGGGIMGC NNDQIIGNHE DHVETGLRFT IWKEIDKRES SSCCENNITT NNDLVKCYSS  120
SSSSSKIRFL INSNQTETAT QTTDSGRNFQ DLNPILSSSS PSPSSLDQMN KRTSALHDSG  180
AIIRTCSDCN TTKTPLWRSG PRGPKRKARR AMAEAAAAAN GRIPYGGGKP TNKAVQQKIM  240
TKPAATMKRK CKDVVVGGGG GGGGGGRKNL CFEEIKIRGR LSEISSSYQR VFPQDEREAA  300
ILLMTLSYGL LHG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818064e-76LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132564e-76LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135818.11e-129PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0A0LZE41e-127A0A0A0LZE4_CUCSA; Uncharacterized protein
STRINGXP_004158464.11e-128(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3115622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-11GATA family protein