PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011206
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 594aa    MW: 66027.6 Da    PI: 7.3754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011206genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-07302323526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                lC  f  +G C++G++C+F+H+
  Cla011206 302 LCFKFTSSGSCPRGEKCNFHHD 323
                56666778*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.07E-367220No hitNo description
PROSITE profilePS5010313.835297325IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-6301325IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4302323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779329357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-5331357IPR000571Zinc finger, CCCH-type
SMARTSM003560.019331356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4334356IPR000571Zinc finger, CCCH-type
PfamPF046771.3E-38374487IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541972.84E-9375452IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.104.9E-6379457IPR011146HIT-like domain
PfamPF046764.9E-16513591IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSPPRILLCG DVFGRLNQLY KRVISVNKSA GPFDALLCVG QFFPDSTDQL DDFMDYIEGR  60
SVIPLSTYFI GDYGVGAAKV LLASSKDSAN QGFKMDGLKI CANLHWLKGS GKFTLHGLSV  120
AYLSGRRSSD GLPFGTYTQD DVDVLRAIAE EPGVTNRAAT PDIPPGVSDL SGSDAIISEL  180
AVEIKPRYHI AGTKGVFFAR EPYSNVDAVH VTRFLGLASV GNKEKQKFLH AISPIPSSTM  240
SAAEISMKPP DTTLSPYTLT ERKAEASDSA KRSSNSVSES QYWRYEVSQK RQKHGTLDGN  300
KLCFKFTSSG SCPRGEKCNF HHDIDAREQS QRGVCFDFLN KGKCERGPDC NFKHSFQNEV  360
DSHSGKRRSG NAGTNRSKEC WFCLSSPNIE SHLIVSVGET FYCALAKGPL VPDHILIVPV  420
EHFPNTLSLG PEYETEINRL QNCLRKYFKS QGKEVVFFEW VSKRSTHANL QAVPIPTSRV  480
HVIQNIFDMA AEKLGFKFVI SKSADAPGEG RKSLRIQFDS NHSFFYAELP ECVTLSHVIE  540
ENEIFPAQFG REVLAGLLNM ADKADWRNCT HSKEEETKMA EDFKTRFENF DPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-12378591673887CWF19-like protein 2
6id1_U2e-12378591673887CWF19-like protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901009.10.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A1S4DYF20.0A0A1S4DYF2_CUCME; zinc finger CCCH domain-containing protein 64 isoform X1
STRINGXP_008450861.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923