PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011169
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 327aa    MW: 37355.6 Da    PI: 9.385
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011169genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2471114144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk+++
  Cla011169  71 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVD 114
                79***************************************986 PP
2QLQ55.32e-19337236
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               +FT +Q+q+L++Q+l++Ky++++ P+Pp+Ll+ i+
  Cla011169  3 PFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIK 37
               8*****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-10238IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.918338IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14336IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.76571115IPR014977WRC domain
PfamPF088791.8E-2072113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFPFTSSQWQ ELEHQALIFK YMVSGIPIPP DLLFGIKRST LDSTFTSKFF PHHPQHVGWN  60
YLQMSLGRKI DPEPGRCRRT DGKKWRCSKE AYPDSKYCER HMHRGKNRSR KPVDVLKTTA  120
TNDLNHHSNP TFSSLKNNSS LLSYRPFPGH RISSTPNGNG ISTKDTNTLL LLEPGSYSDR  180
SPDYRSRYTY GLKEEVDEHV FFSQEPSEAT GRADYSASSI ANSLQLTPLT MSCSSLYPKQ  240
SNSSSLQSDQ SCYQLHQSLK DPLTQQKRDE SQKTVHRFFD EWPPKERGSW LEFDEKSSNT  300
SSVSTTRLSI SIPTASNDLP IFRSKNP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-173LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-173LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022147551.10.0growth-regulating factor 6 isoform X2
TrEMBLA0A1S3BQB10.0A0A1S3BQB1_CUCME; growth-regulating factor 4
STRINGXP_008450915.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-55growth-regulating factor 5