PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla011139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22597.9 Da PI: 4.7446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 20 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr++k +g+Wv+eIr p++ r r++lg++++ae+Aa+a +aa +l+g Cla011139 20 SRYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 70 79*****998.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.17E-31 | 20 | 80 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 20 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 20 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTKPSSPQKS SAAAVDTSDS RYKGVRRRKW GKWVSEIRLP NSRERIWLGS YDSAEKAARA 60 FDAALFCLRG RSARFNFPDN PPEIAGASLL SRAEIQSVAA QFANSDPPPS SECTRPAVDS 120 PSVVSEVTTS VIECDERSPF LDLHTAMGSG NYGSDFGLFP EYNPFYNEMF INGSSSSTTA 180 PCFDYGDENF DAITTHQDSS FLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 14 | 78 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 28 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681806 | 1e-121 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. | |||
GenBank | LN713256 | 1e-121 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144051.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 2e-55 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0A0M292 | 1e-113 | A0A0A0M292_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144051.1 | 1e-114 | (Cucumis sativus) | ||||
STRING | XP_004167797.1 | 1e-114 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 7e-56 | ERF family protein |
Publications ? help Back to Top | |||
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