PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla010929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 34786.8 Da PI: 5.2692 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 106 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r r++lg++ taeeAa +++a+ +l+g Cla010929 106 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTYNTAEEAAMVYDNAAIQLRG 155 89*******.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-30 | 105 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 106 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-13 | 106 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-39 | 106 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.92E-32 | 106 | 162 | No hit | No description |
PROSITE profile | PS51032 | 23.103 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MDLFSSLVVP PIKYTEHRNQ TKLVSPPFMG PKVVRISVTD ADATDSSSDE EKEEYACRRV 60 KKFVNEITIE ASSTGKSSRR KSTGGKSKFP AVNRGPLKQL PAGSRKFRGV RQRPWGKWAA 120 EIRDPSRRVR VWLGTYNTAE EAAMVYDNAA IQLRGPTALT NFTPPPVKSS PETATAVSSG 180 YVSTEESNDN LSSPTSVLRC PSPSANDALS EKMSATTGKE IRRDESEKLS DFSFHSNCDT 240 IFPNDIFDFQ PPVPSPFDET SFNDAVLKGD YGSSMFINPG DDFGFGFGFG LSTWHMVEDS 300 FQDFSDIFGS DPLLAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 102 | 162 | 1 | 62 | ATERF1 |
3gcc_A | 4e-20 | 102 | 162 | 1 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149766.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
Swissprot | Q9SUQ2 | 1e-67 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A0A0KWY5 | 0.0 | A0A0A0KWY5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170648.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23750.2 | 7e-55 | cytokinin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|