PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010867
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 140aa    MW: 15908.9 Da    PI: 10.038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010867genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.73.4e-11116136121
                ---SS-EEEEEEE--TT-SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                ldDgy+WrKYGqK vk+++fp
  Cla010867 116 LDDGYRWRKYGQKAVKNNKFP 136
                59******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-12101136IPR003657WRKY domain
SuperFamilySSF1182902.88E-9108136IPR003657WRKY domain
PROSITE profilePS5081112.163111136IPR003657WRKY domain
PfamPF031063.4E-7117136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MVFSRASQLV EMQRGDCFTQ PPPVSGGFPL FRDVPTDDMS FDATSRMKDD DIGVPLSKRF  60
HVDESARNGV DGLEKKEAVM AGTTTTTTTG RGDYDKRKKM RSRRFAFQTR SQVDILDDGY  120
RWRKYGQKAV KNNKFPSLEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RKKMRSR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818743e-47LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132613e-47LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022145186.12e-43probable WRKY transcription factor 75
TrEMBLA0A0A0KU501e-40A0A0A0KU50_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BYF21e-40A0A1S3BYF2_CUCME; probable WRKY transcription factor 48
STRINGXP_008454014.12e-41(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-19WRKY DNA-binding protein 75