PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010849
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 291aa    MW: 32613.7 Da    PI: 4.6605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010849genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07203248247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + W   E+ l++ +   +G+g Wk Ia+++  +++ kq+ s+ qky
        Cla010849 203 KDWCDSEHGLFLVGLDIFGKGGWKNIANEVVITKSHKQVASHAQKY 248
                      679999*************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.157197253IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-6197254IPR009057Homeodomain-like
SMARTSM007170.0075201251IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-11202252IPR006447Myb domain, plants
PfamPF002494.4E-6202248IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-9203251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDNYNSYLPS FPVPPNQTLQ FDESSFPSYY QIDNSVFEQS SMTMLPPPPP VMNIPPNQAM  60
TIGLPGESKT NAEIVCENYL KQYFSPYVTD DNVVDYSNYV DPSLINWSCE REVNYDDSAP  120
VMKSSEFDYL NSDDIKTTQQ NLLALPPSDF LSSDVVDFYS TRNWPLAAES NLPSTQLPPL  180
PPPPKGAEAA INGEASSSKI KKKDWCDSEH GLFLVGLDIF GKGGWKNIAN EVVITKSHKQ  240
VASHAQKYFN RQLLPKEKRK RPSIHDINTV DPVLLMQVRA RLGLPLTSSM P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-24MYB family protein