PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010840

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

FAR1

Protein Properties

Length: 256aa MW: 29658.4 Da PI: 5.5096

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010840	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.5e-26	75	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++vGF+vr++++++s+ n++++ ++fvCskeg+r+++ +++ + tr gC+a++++ +++ gkw vtk++++HnH l Cla010840 75 EFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCrKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLL 165 6***************************************9987723333448899****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-23	75	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDCQSSHTFD SDESDIDIQT EIYEKGGSID DIRNDLDFCL RDDDKVAEQS VVDLPMDGVE 60 PYIGMEFSSR DEAREFYVNY GRRVGFTVRI HHNRRSRVNN QVIGQDFVCS KEGFRAKKYV 120 CRKDRILPAP PITREGCQAM MRLALRDGGK WAVTKFVKDH NHLLLSPSKV PWRGSGKNLL 180 SEDEKDKRIR ELSVELYNER QKYKRKCAAY EEQLKTILKE VEMHTECISN KVAEVVKSIR 240 EVEEEEESGG LNEGWI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453975.1	1e-179	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3BX14	1e-177	A0A1S3BX14_CUCME; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008453975.1	1e-178	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-38	FAR1 family protein