PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010762
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 300aa    MW: 33416.1 Da    PI: 8.7256
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010762genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.71.4e-32471712115
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg........kaa 91 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +sas     +++   ++++++ +        ka+
  Cla010762  47 FGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGlhYQSMLPPTVHHPHRSefkincidKAE 146
                689*************************************************************777772222222222222222222245556776444 PP

        TCP  92 ksaa.kskksqksaasalnlakesr 115
                 +++ + +k+qks+++ +n+++ s+
  Cla010762 147 VKDEtELEKQQKSNNNSNNPSHPSS 171
                4444366666666666666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.67149107IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2849163IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MIKNSKEENS PPPKLAAAGG SSSSSLAAAT PWLRLKDPRI VRVSRAFGGK DRHSKVCTIR  60
GLRDRRVRLS VSTAIQLYDL QDRLGLNQPS KVVDWLLNAA KDEIDELPPL PIPSASLGLH  120
YQSMLPPTVH HPHRSEFKIN CIDKAEVKDE TELEKQQKSN NNSNNPSHPS SFSALLNNVS  180
APPFGFYWDH NPPSSSTSSS TTTTNNLPFL TSQQPQDNNN LHNFNHLNLS LPSPLSLEFN  240
HLHQNFFINN NSLNNTPPNF HPAVRPFHFS MATKFLSQDK NNNNNADNPP NKDHGFASDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2054108155Putative transcription factor PCF6
5zkt_B7e-2054108155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444059.11e-132PREDICTED: transcription factor TCP17-like isoform X1
RefseqXP_008444060.11e-132PREDICTED: transcription factor TCP17-like isoform X2
TrEMBLA0A1S3B9161e-130A0A1S3B916_CUCME; transcription factor TCP17-like isoform X1
TrEMBLA0A1S3B9G81e-130A0A1S3B9G8_CUCME; transcription factor TCP17-like isoform X2
STRINGXP_008444059.11e-131(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-48plastid transcription factor 1