PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29683.3 Da PI: 6.7269 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.5 | 5.4e-29 | 93 | 180 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Cla010750 93 FYNSYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSP 180 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-26 | 93 | 180 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRIEWNELEF GVDGDSEVVG NSTLVEDSKP LDENETGVSS IERIFDQDRD EKIIQDTSGR 60 NAILDSVPGL PVVQVDEPYV GQEFENEAAA HAFYNSYATR VGFVIRVSKL SRSRRDGTAI 120 GRALVCNKEG YRMPDKREKI VRQRAETRVG CRAMILVRKV NSGKWVVTKF VKEHTHPLSP 180 GKGRRDCIYD QYPNEHDKIR ELSQQLAIEK KRSATYKRHL EVIFEYIEEH NDNLSRKIQH 240 IVDNVKEMES IEQQNHR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022138245.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A1S3BY81 | 1e-180 | A0A1S3BY81_CUCME; protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | XP_008453933.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-110 | FAR1 family protein |