PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010708
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 215aa    MW: 24820.7 Da    PI: 7.1653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010708genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-0793109926
                GGGTS--TTTTT-SS-SS CS
    zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                f r+G C+ Gd C FaHg
  Cla010708  93 F-RSGSCPKGDFCEFAHG 109
                4.55*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.51E-583114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.19784111IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-584110IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-588109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-689112IPR000571Zinc finger, CCCH-type
SMARTSM0035613119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MFQGFVFGIN DVYGHEFSAM SLPEFTNSQS TEQIDDTAVF SSDEFRMYSY KIQRCPRNRS  60
HDWTECPYAH RGEKAQRRDP RRFNYTAVAC PAFRSGSCPK GDFCEFAHGV FEYWLHPARY  120
RTRACNAGRF CQRKVCFFAH SPEELRPDTK QKFNLNAHRL RVAVSTVECL PEEKIDGVSE  180
IPVRENGGGR GNRSFGLEVS ELDSPHIDWI SELLQ
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454474.11e-139PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650366e-69C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A1S3BYP81e-138A0A1S3BYP8_CUCME; zinc finger CCCH domain-containing protein 54
STRINGXP_008454474.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-71C3H family protein