PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010660
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CPP
Protein Properties Length: 598aa    MW: 64745.6 Da    PI: 7.7189
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010660genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14122161242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  Cla010660 122 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCTNCHNNVEN 161
                89**************************.********9875 PP
2TCR50.93.1e-16206245140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Cla010660 206 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 245
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-16121161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.74122246IPR005172CRC domain
PfamPF036381.6E-11123158IPR005172CRC domain
SMARTSM011148.4E-20206247IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12209244IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MGEVGNREMD NLPPLNAQTD SGEPGNVVSS DVPAKRLARQ LDFTGFGGAV LPEHPHFQSQ  60
PPCQQSESPA VMVVQSQSQP QSPQHLTVLP IVTKASHPSR KPDSPKSRSR SSVETKDATP  120
KKQKQCNCKH SRCLKLYCEC FASGIYCDGC NCTNCHNNVE NEASRREAVE TTLERNPNAF  180
RPKIASSPHG TLESRDEIGE VVMLGKHNKG CHCKKSGCLK KYCECFQANI LCSENCKCMD  240
CKNFEGSEER QALFHGDHAN NLAYIQQAAN AAITGAIGSS GYACLPTSKK RKGPELCFGP  300
VGKDSPLNSI PQFHQANNVM SSGTSTSSPF PVAHVGNGSP AASGPSKFSF RSLLADLIQP  360
HDLKELCSVL VVFSSEVAKK IAEQRNAEKQ INDPPQISRA SSTVDESQHQ KAEEKAADGE  420
CGSSNRSDRS VHDNSNSDSS DITKARPMSP GTLALMCDER DTMFMGAGLA DGSAGHDCNT  480
SSHMPDKSVS EVYIEQERIV LTKFRDCLNK LITLGEIKET KFTCRSEVGN ENLSNNFTSN  540
NGCQQRSISN GVVKNVALSA HRIPPVGAAA RHPNNDLLLK ILPLPKNSKS KPQVDREV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-311142552132Protein lin-54 homolog
5fd3_B7e-311142552132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818111e-160LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132561e-160LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462731.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-179TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3CJ790.0A0A1S3CJ79_CUCME; protein tesmin/TSO1-like CXC 5
STRINGXP_008462730.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-165Tesmin/TSO1-like CXC domain-containing protein