PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010572
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24161.9 Da    PI: 10.0818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010572genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-231461249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               + e ks +qvtfskRr+g++KKA ELSvLC+aeva+i+fs+++k++ +
  Cla010572 14 KLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 61
               67899***************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.039565IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-33564IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-28675IPR002100Transcription factor, MADS-box
PROSITE patternPS003500761IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-21727IPR002100Transcription factor, MADS-box
PfamPF003197.8E-241561IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-212742IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-214263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKKTLGRQKI EIKKLEKKSS KQVTFSKRRA GLFKKAGELS VLCGAEVAII VFSPNDKVFC  60
FGHPDVDVLL DRYLTGNLSP PKPAESYIPV AEFNRDFTDF ALEFEAEKKR AAELIRAAED  120
SRKNGGFWWQ EAVEGMRLEE LKEFRSALMD LRAKVAERVE KLTAVRIGGP LLPALPPPPQ  180
PMTSSSFHLA GNHQQLPPST AFHLAGNHRV ATGLGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17592186MEF2 CHIMERA
6byy_B3e-17592186MEF2 CHIMERA
6byy_C3e-17592186MEF2 CHIMERA
6byy_D3e-17592186MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147877.21e-131PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0A0LE011e-130A0A0A0LE01_CUCSA; Uncharacterized protein
STRINGXP_004164009.11e-131(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-35AGAMOUS-like 62