PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | CO-like | ||||||||
Protein Properties | Length: 409aa MW: 45162.5 Da PI: 6.3786 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17 | 1.3e-05 | 47 | 72 | 5 | 30 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C++++ ++++ C d++ lC+ C Cla010504 47 LCDKCNAQPAIVRCMDDKLSLCQGCD 72 7************************7 PP | |||||||
2 | CCT | 62.8 | 1.1e-21 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ Cla010504 353 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 396 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.503 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00226 | 3 | 35 | No hit | No description |
Pfam | PF06203 | 1.2E-16 | 353 | 395 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.684 | 353 | 395 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MEPLCEFCGV VRAVVYCKSD SARLCLHCDG RVHSANSLSR RHLRSLLCDK CNAQPAIVRC 60 MDDKLSLCQG CDWNSANACS SLAHPSQVLH SYSGCPSIPD FSRIWSSVLH SPSSSSPTSL 120 PTPHHSPNFN DLQTSSSKFH PWISPPPPSL FSPHPSYHLP FSTPQPTFLA DHSNLPKGCS 180 DFKDHDNTDI CEGLNLDDVS LDLENGEELF GCPQGTMKCQ FEDGELDCLL MEKNFFSVTE 240 SNAPPLDNTI EDSSSGQQEF MGFQSSQDGL SMNMIQNGNS NCMLMNPSCN GNINIGFPTG 300 QVHSSISLSL SNITGESTAA DYQDCGLSPA FLTETSWDPS MEAIGPQAKD RNRDKAKMRY 360 NEKKKTRTFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD YDPLVTRNF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 1e-106 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 1e-106 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022140645.1 | 0.0 | zinc finger protein CONSTANS-LIKE 12 isoform X1 | ||||
Refseq | XP_022140646.1 | 0.0 | zinc finger protein CONSTANS-LIKE 12 isoform X1 | ||||
TrEMBL | A0A0A0LMY7 | 0.0 | A0A0A0LMY7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004151929.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004172621.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7052 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 8e-83 | B-box type zinc finger protein with CCT domain |