PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 301aa MW: 32395.2 Da PI: 9.0491 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.4 | 3.9e-34 | 57 | 112 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAaslG+ha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e Cla010330 57 VSYKECLKNHAASLGAHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRRDPE 112 79*****************************99********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-17 | 57 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-28 | 57 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.5E-31 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.557 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.97E-18 | 187 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-29 | 194 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-27 | 199 | 256 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDLAAPAPIT TSSNNTKSPD ADSDTPTKIP PSSSLKSLPF TNGVLKRHHH RQPSVIVSYK 60 ECLKNHAASL GAHALDGCGE FMPSPSATPT DPTSLKCAAC GCHRNFHRRD PEDPISTLAI 120 NTAPTHVIEY QPHHRHHPPP PSLPGNRSPN SASPPPISSS YYPSAPHMLL ALSAGLSGRP 180 PENITQGNNS VLTVSPNTRK RFRTKFSNEQ KEKMLDFAER VGWKMQKRDE DLVRDFCNQV 240 GVERGVLKVW MHNNKNTMGK KPDSNGTTTA AAATAAVNNN EDGPDGGLHM HVGSNGSSSS 300 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 198 | 257 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN683864 | 0.0 | LN683864.1 Cucumis melo genomic scaffold, unassembled_sequence31355. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655994.1 | 1e-154 | PREDICTED: zinc-finger homeodomain protein 10-like | ||||
Swissprot | Q9LXG0 | 5e-71 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A0A0KSA4 | 1e-152 | A0A0A0KSA4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004168480.1 | 1e-153 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-62 | homeobox protein 34 |
Publications ? help Back to Top | |||
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