PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010316
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 403aa    MW: 44812.5 Da    PI: 6.888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010316genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d++k++G g+W++ +++ g+ R++k+c++rw +yl
        Cla010316 14 KGPWTPEEDQKLLDYIKEHGHGSWRALPSKAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.89.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
        Cla010316  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.971961IPR017930Myb domain
SuperFamilySSF466891.91E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-141363IPR001005SANT/Myb domain
PfamPF002495.7E-171461IPR001005SANT/Myb domain
CDDcd001671.54E-111661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1667112IPR001005SANT/Myb domain
CDDcd001672.59E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLDYIK EHGHGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLTADGHS KSAANLSHIA QWESARLEAE ARLVRESRLR TTSSHSSLQQ  180
QLPNPPSPHL LTKPEPPAIP SRSLDALKAW NHGWSRSSME GNSGVLGRGI GGDHLESPTS  240
TLTFSENVRP IMGTTGGGGE NSIAIIEFVG SSSSCHDHHH HRDEWKEEGF GNASQLQEYK  300
EGFENSMSFT SHEMTLSIEA TWTAESLRTR SDHHSNNNDH NAIAEEGFTN LLLNNNADER  360
SQSDGGGEDS ENGSGSDCYE DNKNYWNSIL NLVNSSPSDS SIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818891e-104LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132631e-104LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023550452.10.0transcription factor MYB16-like
RefseqXP_023550453.10.0transcription factor MYB16-like
RefseqXP_023550454.10.0transcription factor MYB16-like
RefseqXP_023550455.10.0transcription factor MYB16-like
RefseqXP_023550456.10.0transcription factor MYB16-like
RefseqXP_023550457.10.0transcription factor MYB16-like
SwissprotQ9LXF11e-123MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0A0KXE90.0A0A0A0KXE9_CUCSA; Uncharacterized protein
STRINGXP_008459338.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-118myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]