PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | B3 | ||||||||
Protein Properties | Length: 369aa MW: 42122.8 Da PI: 8.624 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 8e-12 | 7 | 66 | 33 | 96 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s tl+ ++g +W+v l rk ++++++++GW++F + +++g +vF+++g+s f +v + Cla010278 7 SAVATLTVPDGHVWRVGL--RKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAF--CVFI 66 55678999**********..**********************************9998..6655 PP | |||||||
2 | B3 | 62 | 9.6e-20 | 246 | 336 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++fr Cla010278 246 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFR 336 78899******************866743...5***************55555..566***********************987677767777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.308 | 1 | 70 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.18 | 2 | 70 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-15 | 5 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.70E-13 | 5 | 68 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 7 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.9E-9 | 7 | 67 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-24 | 235 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-24 | 238 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.44E-24 | 241 | 336 | No hit | No description |
PROSITE profile | PS50863 | 13.874 | 243 | 338 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-20 | 243 | 338 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-18 | 246 | 336 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MIRDELSAVA TLTVPDGHVW RVGLRKADNK FWFEDGWQGF LEHYSIRVGY LLVFRYEGNS 60 AFCVFIFNLN ASEINYQSAA LSSNQRNNYS IQNRIFEEME DYDIPEAIPS NQSMNSGSLR 120 NKLFGDEWNL HQSKSASTLQ AEYLSTRDIG VQFSAVEVKK SADEVRFQNL GDDAAHRIKK 180 SGGKKRKIES SEHHPSAHNS EDLGDIRFRF YESASARKRT VTAEERERAI NAAKAFEPGN 240 PFCRVVLRPS YLYRGCIMYL PSCFAEKNLS GVSGFIKLQT PDGRQWPVRC LYKVGRAKLS 300 QGWYEFCLEN NLGEGDVCVF ELLRMREIVL KVTMFRVIEE GGRMATPNPA SMMNPPPLRS 360 VSHIKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-73 | 209 | 339 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-73 | 209 | 339 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681914 | 0.0 | LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459235.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-124 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A1S3C9T8 | 0.0 | A0A1S3C9T8_CUCME; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_004145349.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-122 | B3 family protein |
Publications ? help Back to Top | |||
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