PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010216
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 493aa    MW: 53734.4 Da    PI: 7.3684
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010216genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33200256259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ei+Y+geHnh+
  Cla010216 200 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-EGQVTEIIYKGEHNHK 256
                8****************************************.***************7 PP
2WRKY106.81.1e-33379437159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Cla010216 379 LDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 437
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29186258IPR003657WRKY domain
SuperFamilySSF1182905.36E-26198258IPR003657WRKY domain
SMARTSM007743.0E-37199257IPR003657WRKY domain
PROSITE profilePS5081123.284200258IPR003657WRKY domain
PfamPF031063.0E-26200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-37365439IPR003657WRKY domain
SuperFamilySSF1182901.31E-29371439IPR003657WRKY domain
PROSITE profilePS5081138.744374439IPR003657WRKY domain
SMARTSM007744.0E-39379438IPR003657WRKY domain
PfamPF031062.6E-26380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGDDDEQPPP PPPPPSKSLR PTINLPPRSS MESLFGGGSG LGFGFSPGPM TLVSSFFSDS  60
DDCKSFSQLL AGAMASPVAA VPPSASEFKA STGLLESPEL FSPGQGPFGM THQQALAQVT  120
MQAAEAYSHN QMQAASFSSS VAPSASSSQL LTSLPVEKTK DQPMQPPLQD SAVASKEPSD  180
NSQSEQRLQS SLCNVDRPTD DGYNWRKYGQ KQVKGSEFPR SYYKCTHPNC PVKKKVERSL  240
EGQVTEIIYK GEHNHKRPQL NKRAKDVGNS NGYSSIHGNP ELSSQVQSGY LNKLNEQTSV  300
SSTAKKDQEL SHVTHEQLSG TSDGEGGSEI ETGVNRKDED EPDAKRRNTE VRISEPASSH  360
RTLTESRIIV QTTSEVDLLD DGYRWRKYGQ KIVKGNPYPR SYYKCTTPGC NVRKHVERAS  420
TDPKAVITTY EGKHNHDVPV GKISSHCSVN SNNPQLKSQN IVTEKKISSN NTDPGNSRQQ  480
PAGLLLLKEE QIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-43200439877Probable WRKY transcription factor 4
2lex_A2e-43200439877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446405.20.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-151WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3BEZ90.0A0A1S3BEZ9_CUCME; probable WRKY transcription factor 3 isoform X1
STRINGXP_008446405.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-136WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]