PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010195

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 339aa MW: 38535.4 Da PI: 7.056

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010195	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.5e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t+skR+ngi+KKA+ELS+LCd+++ +++fs+tgk Cla010195 9 KRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.474	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-26	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.87E-27	2	83	No hit	No description
PRINTS	PR00404	7.2E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YSKRKNGIMK KAKELSILCD IDIILLMFSP TGKPNLCCGK 60 RSIEEVIARF AQQTPQERAK RKMESLDSLR KTFKKLDHDV NIQDFLGTSS QTIEDLAGQA 120 KLLRTQLSEV HQRLSYWSNP DKINNVDHLA QMEDSLRESL NQVRLHKENL QKHPPVPLEF 180 TNQDGMDLPF NMSVEQQLQQ LQHFSWIPSD NQNIVLHDDP NFVLHRDVEC SASSSFASYP 240 GYFGTGRSPE ISNPGQENGV LPELSRTEPL RPQPGGQNSY MSYNVNFFND PRFQPAAEMN 300 LPVNPVDYHV NGNFDTTQHN WASASGPCAV SLLDDRLFP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-127	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-127	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446372.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	1e-118	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A1S3BFQ8	0.0	A0A1S3BFQ8_CUCME; agamous-like MADS-box protein AGL30 isoform X1
STRING	XP_008446372.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-109	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]