PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010193
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 382aa    MW: 42663 Da    PI: 6.5951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010193genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-16111156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
        Cla010193 111 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 156
                      899*****************************.***********996 PP
2Myb_DNA-binding55.81.1e-17163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
        Cla010193 163 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 206
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.011106157IPR017930Myb domain
SMARTSM007174.6E-14110159IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-28111204IPR009057Homeodomain-like
PfamPF002496.8E-16111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-25112164IPR009057Homeodomain-like
CDDcd001679.35E-13114155No hitNo description
PROSITE profilePS5129426.929158212IPR017930Myb domain
SMARTSM007171.8E-14162210IPR001005SANT/Myb domain
PfamPF002492.1E-14163205IPR001005SANT/Myb domain
CDDcd001671.84E-11165205No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20165211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGMLVDEDEE SLNLDLNCAA ATIVSSSSQE SCENGRSFWN FPFSYESMMT RSSETDFGDN  60
GNNNNNNNGS SDFSDGFIEN INESLNQNAA NPTSCSNHTP STGAQSRLCA RGHWRPAEDT  120
KLRELVALYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMQAHRI  180
YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSRCYR RRKLSQSVYR KMEQDLSFLN  240
LPKDNHDIAA TAAATATTSC SSFGNFEGCV DYGFLSQMAI GGGEAMSSNY NNPNNPYFSS  300
CAHLSTLNVL PDPKSRYWDG TSNGFVVPRS HHQYEAYNTA APPTIDDVGA SQAVARNGSS  360
SVTAEVRKQS PRFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-341112117107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-162LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-162LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446370.10.0PREDICTED: transcription factor MYB108 isoform X1
TrEMBLA0A1S3BEX00.0A0A1S3BEX0_CUCME; transcription factor MYB108 isoform X1
STRINGXP_008446370.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-76myb domain protein 105