PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010192

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 431aa MW: 47322.9 Da PI: 8.113

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010192	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.1e-40	110	170	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Cla010192 110 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 170 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	108	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAEVEIGDPI IKLFGKTIAL PLNHLDLPSD SKFLSSETSV LKAGEKETSC EALATEKRGI 60 SSGNQITDQT TSGMSENPSE EREISSPKAS KNEEQSETSI SPDNKTSKKP DKILPCPRCN 120 SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSSS SSHFRQLIIP 180 DGGIHRHQFL GNNGTFLTFT SDSSISDSQN CNPSGFLIST ENGDDHSSKS SITASNSSEK 240 DGKMISQQSV VKNVLPFQPQ LQTFTGLSWP YSSTAPLPYY PPAFPVSYYP ALPYWGCTAP 300 PSWTVINHNG QNSFTNSSVL GKRLRDGKLV RSPANSECEE IVKQRNCEEP CFWNPKTMKV 360 DDPNEAAKSC IWSTLGIKNE KAGASTINGG SLFVSLQQSA KGKEENHIES CSLLQANPAA 420 FSRALKFREI A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAEVEIGDPI IKLFGKTIAL PLNHLDLPSD SKFLSSETSV LKAGEKETSC EALATEKRGI  60
SSGNQITDQT TSGMSENPSE EREISSPKAS KNEEQSETSI SPDNKTSKKP DKILPCPRCN  120
SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSSS SSHFRQLIIP  180
DGGIHRHQFL GNNGTFLTFT SDSSISDSQN CNPSGFLIST ENGDDHSSKS SITASNSSEK  240
DGKMISQQSV VKNVLPFQPQ LQTFTGLSWP YSSTAPLPYY PPAFPVSYYP ALPYWGCTAP  300
PSWTVINHNG QNSFTNSSVL GKRLRDGKLV RSPANSECEE IVKQRNCEEP CFWNPKTMKV  360
DDPNEAAKSC IWSTLGIKNE KAGASTINGG SLFVSLQQSA KGKEENHIES CSLLQANPAA  420
FSRALKFREI A

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655685.1	0.0	PREDICTED: cyclic dof factor 1
TrEMBL	A0A0A0KSR0	0.0	A0A0A0KSR0_CUCSA; Uncharacterized protein
STRING	XP_008446369.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24617	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-71	cycling DOF factor 2