PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010181

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 388aa MW: 43796.4 Da PI: 8.0442

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010181	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	6e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ Cla010181 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLLI-ELIKQIDIYKYDPWDLPKLGGSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGSKC 112 579**********************999.89***********87778999**********************************966677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg+ktdW+mhe+rl Cla010181 113 IGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-58	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	14	172	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEERNDSEKV EEVMLPGFRF HPTDEELVGF YLKRKIQQRP LLIELIKQID IYKYDPWDLP 60 KLGGSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGS KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLNDPPPT KRLIDKTIPP NDSWAICRIF KKTNSTAQRA 180 LSLSSTNMIP PLLSETNTSD DNHNAYNFPT KFPTLPSFET HQYSSSSISN NITYPFDFVT 240 SCKPFNTQII TNNVRSFSHL PILAEPPPLA PPPPPNSTDQ EKCRVDLSSI LLNMSSSVLG 300 DFGIMKPNDT LDNLHTQQQF INNYPQTFSH DQMQAAAGDQ FVGAIRSNNV GSYPLSISDL 360 GKPSFIWDSS SSCPSEVSTS LSTTNCYT

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEERNDSEKV EEVMLPGFRF HPTDEELVGF YLKRKIQQRP LLIELIKQID IYKYDPWDLP  60
KLGGSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGS KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLNDPPPT KRLIDKTIPP NDSWAICRIF KKTNSTAQRA  180
LSLSSTNMIP PLLSETNTSD DNHNAYNFPT KFPTLPSFET HQYSSSSISN NITYPFDFVT  240
SCKPFNTQII TNNVRSFSHL PILAEPPPLA PPPPPNSTDQ EKCRVDLSSI LLNMSSSVLG  300
DFGIMKPNDT LDNLHTQQQF INNYPQTFSH DQMQAAAGDQ FVGAIRSNNV GSYPLSISDL  360
GKPSFIWDSS SSCPSEVSTS LSTTNCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-52	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-52	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-52	16	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-52	16	179	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	16	179	22	174	NAC domain-containing protein 19
3swm_B	6e-52	16	179	22	174	NAC domain-containing protein 19
3swm_C	6e-52	16	179	22	174	NAC domain-containing protein 19
3swm_D	6e-52	16	179	22	174	NAC domain-containing protein 19
3swp_A	6e-52	16	179	22	174	NAC domain-containing protein 19
3swp_B	6e-52	16	179	22	174	NAC domain-containing protein 19
3swp_C	6e-52	16	179	22	174	NAC domain-containing protein 19
3swp_D	6e-52	16	179	22	174	NAC domain-containing protein 19
4dul_A	6e-52	16	179	19	171	NAC domain-containing protein 19
4dul_B	6e-52	16	179	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-141	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-141	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655679.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-103	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0A0KVX8	0.0	A0A0A0KVX8_CUCSA; Uncharacterized protein
STRING	XP_004155390.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-104	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]