PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010073

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 169aa MW: 19077.1 Da PI: 8.2147

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010073	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.5	2e-55	3	162	2	167
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 ++f+ +e++CyvqC+ C+til+vsvP sl++ vtv CGhC+sllsvn++ka+ + l s sl ++ + e+++++++ + s s ++++ k Cla010073 3 HLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVpLHFLS----SLSRNVPK------EACREMNSGKFSDSFKRPNLK 92 78999*****************************************9987643122222....33333333......333333333444444444444 PP YABBY 101 lsenedee..vprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 +se e ee +p +pp v++PPekrqr+Psayn+fik+ei+r+ka+nP+++h+eaf +aaknWa fP+i Cla010073 93 FSEYEVEEglIPATPPfVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQ 162 44433333227777777************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-57	8	162	IPR006780	YABBY protein
SuperFamily	SSF47095	8.51E-10	104	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.2E-6	112	160	IPR009071	High mobility group box domain
PROSITE profile	PS50118	8.709	117	169	IPR009071	High mobility group box domain
CDD	cd00084	2.02E-4	119	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MNHLFELPEK ICYVQCGICT TILLVSVPCG SLSMAVTVTC GHCSSLLSVN MMKATLVPLH 60 FLSSLSRNVP KEACREMNSG KFSDSFKRPN LKFSEYEVEE GLIPATPPFV NKPPEKRQRA 120 PSAYNCFIKD EIRRLKAHNP EMTHKEAFRT AAKNWANFPP IQEKEDTEN

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	2e-45	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	2e-45	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446193.1	1e-110	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	6e-56	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0A0KTN4	1e-109	A0A0A0KTN4_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3BDZ8	1e-109	A0A1S3BDZ8_CUCME; axial regulator YABBY 4
STRING	XP_008446193.1	1e-110	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-58	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]