PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010069
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 324aa    MW: 36866.6 Da    PI: 4.8617
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010069genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092663002155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yp+++++  LA+++gL+++q+ +WF N+R ++
  Cla010069 266 KWPYPTEADKVALAERTGLDQKQINNWFINQRKRH 300
                679*****************************885 PP
2ELK25.72.7e-09220241122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                +LK+ Llr +++++++Lk EFs
  Cla010069 220 DLKDKLLRRFGSHISTLKLEFS 241
                69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-2080124IPR005540KNOX1
PfamPF037901.2E-2082123IPR005540KNOX1
SMARTSM012567.0E-26130181IPR005541KNOX2
PfamPF037916.4E-24134180IPR005541KNOX2
PROSITE profilePS512139.341220240IPR005539ELK domain
SMARTSM011888.3E-5220241IPR005539ELK domain
PfamPF037892.2E-7220241IPR005539ELK domain
PROSITE profilePS5007112.746240303IPR001356Homeobox domain
SuperFamilySSF466891.63E-19241315IPR009057Homeodomain-like
SMARTSM003894.7E-12242307IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-27245304IPR009057Homeodomain-like
CDDcd000864.23E-12252304No hitNo description
PfamPF059201.7E-17260299IPR008422Homeobox KN domain
PROSITE patternPS000270278301IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEMYGLQST AEYSDKALMS PENLILPPDY QSLLVSSGEF RDRIPVFGSN ELLSAAASAI  60
SEAEAASITP EIRREEDMVN VIKAKISSHP TYPRLLDAYI DCQKVGAPPE IAHLLEGIRQ  120
ESDLCNRHAV TTCLGVDPEL DEFMETYCDM LVKYKLDLKR PFDEATTFLN KIELQLSNLC  180
NGAFSRSLSD DGAVSSDEEL SGGEMEVVEA EAQTKGENRD LKDKLLRRFG SHISTLKLEF  240
SKKKKKGKLP KEARQTLFEW WNVHYKWPYP TEADKVALAE RTGLDQKQIN NWFINQRKRH  300
WKPSENIQFE GMDGLSSGRF FRED
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-130LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-130LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135481.20.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-151KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0A0KVK50.0A0A0A0KVK5_CUCSA; Uncharacterized protein
STRINGXP_004165354.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-136KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]