PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 360aa MW: 40084.4 Da PI: 6.6489 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa+a++ a+++++g Cla010041 59 RYRGVRRRP-WGRYAAEIRDPNS---KERRWLGTFDTAEEAARAYDCAARAMRG 108 59*******.**********832...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.748 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-31 | 59 | 115 | No hit | No description |
Pfam | PF00847 | 4.7E-13 | 59 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-30 | 59 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-35 | 59 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 59 | 116 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-10 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEEALRRLNG LPITASHFDD AVSTPNNHRK KTAVAAAISS TANADRRITR EGSSSGAMRY 60 RGVRRRPWGR YAAEIRDPNS KERRWLGTFD TAEEAARAYD CAARAMRGLK ARTNFVYPPT 120 PSPPHSLSDQ LLSPLNFTKQ SQIARHLATS SNWSSFTNAH TFDYPEPASQ KIPPSSFLNM 180 LLPHHDIHAS SNADFVSSAP QFPLVDDQFH CPKSPFSSNP VIEKHESNDD FLRDSEFIPK 240 EPSSSGLLEE IIYGFFPKPQ NSQPSNDMSS VASEANFGHS FDGYKRSCVD DQQTGYNYQT 300 GSVQLGNLNH SYCNAAEEMS FVNGLPMNVQ MGMESGNLIM ENLLQYPEFF NAYAAKIQNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 59 | 115 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 1e-169 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 1e-169 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656252.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A0A0KTJ2 | 0.0 | A0A0A0KTJ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_008446161.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 7e-18 | DORNROSCHEN-like |