PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | AP2 | ||||||||
Protein Properties | Length: 484aa MW: 54592.6 Da PI: 8.5175 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 241 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Cla009964 241 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 297 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 51.1 | 3.3e-16 | 340 | 391 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Cla009964 340 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 391 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-15 | 241 | 306 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-10 | 241 | 297 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-19 | 241 | 305 | No hit | No description |
PROSITE profile | PS51032 | 17.49 | 242 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-13 | 242 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-22 | 242 | 311 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-11 | 340 | 391 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-25 | 340 | 401 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-17 | 340 | 400 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.755 | 341 | 399 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-18 | 341 | 400 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-33 | 341 | 405 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 381 | 401 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MAMEVTSESQ QHSHYHYHSQ ASSAGVVSNT MSNSFLASHH SNGDFYFSPL SVMPLKSDGS 60 LCIMESISAS QPQETLPNIS PKLEDFLGGA THGKEATTLS LDNIYYNQNN EVDSESQHSL 120 DLFKQQEQIH ILFHSQRYYS GLLQYPTEDP NKESHIASCY SEIQQDMEQR INGCCFGGMN 180 CQDLQPLSLS TSPSSQSSCV TAPSQISQPG PATMETKKRA FDNRKQSVHR KSIDTFGQRT 240 SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGPST 300 HLNFPLKNYQ LQIEEMKNMN RQEYVAHLRR KSNGFSRGAS IYRGVTRHHQ HGRWQARIGR 360 VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR GVNAITNFDT SRYNVERIIA SSSLLSGEFA 420 RRNTEQKPTN TIKHKDPKQN IDKIDDPSKI SNNLDRKVVF NNNPILDPSA MVGSTDQKCM 480 KSSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 1e-164 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 1e-164 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452679.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q38914 | 1e-144 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S3BUF3 | 0.0 | A0A1S3BUF3_CUCME; AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
STRING | XP_008452679.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-136 | AP2 family protein |