PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19748.1 Da PI: 10.5624 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g++KK +ELSvLCda++ +i+fss+gkl+ey++ Cla009883 10 RIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIGLIVFSSNGKLFEYCT 59 8***********************************************96 PP | |||||||
2 | K-box | 31.1 | 1e-11 | 84 | 146 | 11 | 73 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 ++ e+l++ ++ ++k ++ Lq ++ ++ +d ++ l++L +e++L++sl+++R++K + Cla009883 84 MNDPEELERRVRIMRKDTDDLQLSLQRYTADDFSTFHLRDLDDIENRLQNSLNRVRARKAFSI 146 5667899999*************************************************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.74 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.24E-39 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-30 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.7E-10 | 85 | 145 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 6.752 | 87 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGRGKIAIRR IENRTTRQVT FSKRRGGLFK KTHELSVLCD AQIGLIVFSS NGKLFEYCTQ 60 TTCMDQIIRR YQIAIGNRIP EQNMNDPEEL ERRVRIMRKD TDDLQLSLQR YTADDFSTFH 120 LRDLDDIENR LQNSLNRVRA RKAFSIISHV LLLLLLLLLL LLLLLLRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 7e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 7e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 7e-19 | 1 | 71 | 1 | 69 | MEF2C |
6byy_A | 6e-19 | 1 | 93 | 1 | 91 | MEF2 CHIMERA |
6byy_B | 6e-19 | 1 | 93 | 1 | 91 | MEF2 CHIMERA |
6byy_C | 6e-19 | 1 | 93 | 1 | 91 | MEF2 CHIMERA |
6byy_D | 6e-19 | 1 | 93 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-71 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-71 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658350.1 | 1e-95 | PREDICTED: MADS-box protein FBP24 isoform X2 | ||||
Refseq | XP_011658353.1 | 1e-95 | PREDICTED: MADS-box protein FBP24 isoform X5 | ||||
Swissprot | Q9ATE5 | 4e-53 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A1S3AYU5 | 7e-90 | A0A1S3AYU5_CUCME; MADS-box protein FBP24 | ||||
STRING | XP_004134531.1 | 4e-95 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 4e-43 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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