PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009853
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 484aa    MW: 54152.8 Da    PI: 6.4186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009853genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.1e-31242300259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Cla009853 242 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.96236302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-31238302IPR003657WRKY domain
SuperFamilySSF1182903.53E-26240302IPR003657WRKY domain
SMARTSM007741.4E-37241301IPR003657WRKY domain
PfamPF031061.1E-25243300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLLLFEMENY EEGDLTDIVR GGSSRSRSTT RSSTSHCKTE LGDQDEDQDS PFYSSSQDNN  60
YNPQWSSSQF SSQLLLLQDH HHHHHHQYSF GDPFCSTVAA SLDLHQELDN TNNNTFFNGI  120
TTTTTTSTQD ELIKTPSSSN IFSRMLQISP SPDKFPTISS LNSSSNFLIP NHSLNSPTTP  180
HSDHLHHFLH HNDNNPSPSA LHISSPRNPP GIKRRKSQAR KVVCVPAPVA ASSRPNGEVI  240
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  300
WPTQRNALAG SSRSQQSKNN NITTTTSSTS TTTPTPNSSK LSQDHHHKNK EEKEEHQDQN  360
NGTLLSAAAT TTSNNNNNVK EEETENHHHQ SMMSEGFDDD HDFFADLEEL ETDPLTLLFT  420
TQQPLKLDQI KESATTTPTT TTGCLHDVVP FNNLFDWPPP PLNNNSTPFH EQPPPTTPTN  480
GGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25216303280Disease resistance protein RRS1
5w3x_D7e-25216303280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-64LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-64LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134891.21e-136PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A1S3AZL11e-130A0A1S3AZL1_CUCME; probable WRKY transcription factor 35
STRINGXP_008439520.11e-131(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2461133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-52WRKY DNA-binding protein 35