PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009785
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 453aa    MW: 49073 Da    PI: 8.9768
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009785genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-35862352134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....eaesssssas 83 
                 g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a  aikel+++              +      +    ++++  s ++
  Cla009785  86 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIKAAADAIKELPSLnasfpetpkqlsgeK------VsltdQPGQLDSVEQ 179
                689*************************************************************776654443322220......123332222222222 PP

        TCP  84 .nsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                 +s+ + + +++a+s++s++s+ s l+l++      r kar+ra+er ++++ +++
  Cla009785 180 kQSQLHVSLSKSACSSNSETSKGSGLSLSRsevrVNRFKARERAKERAQKDKEKEQ 235
                12233355555557777777777777777752335558999999997777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-4087233IPR005333Transcription factor, TCP
PROSITE profilePS5136931.66288146IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEVVDNIQEQ SRKFPRLANG RSSDSNEIGL KGVANIHPGD EEDKESKRVG GSTAGFGGGG  60
VGGADDDTNR LRGWHHSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV ATAIQFYDLQ  120
DRLGFEQPSK AVEWLIKAAA DAIKELPSLN ASFPETPKQL SGEKVSLTDQ PGQLDSVEQK  180
QSQLHVSLSK SACSSNSETS KGSGLSLSRS EVRVNRFKAR ERAKERAQKD KEKEQDSSRI  240
PDHNLTSMTR NSSFTELLAS GAASVSAHRD VGVAAERQWQ SSSVPMDYFS SGILEPSTSR  300
THQSSGFSEQ MNLGTSLPQT ISSTPLFSSV SAGDSNAEQL HQFSFVHDGN IIPVATTQPA  360
GGNDYNLNFT ISSNLPGYYR GTLQSNSSLL PHLQRFSPGD GSNLPFLFGA ATSAAAQLEN  420
HNHYQFSPAF DGRLQLCYGG GSRQSEQKGK GKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2293147155Putative transcription factor PCF6
5zkt_B7e-2293147155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134620.10.0PREDICTED: transcription factor TCP2-like
SwissprotQ93V436e-81TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1S3AZT20.0A0A1S3AZT2_CUCME; transcription factor TCP2-like
STRINGXP_004134620.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-76TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]