PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009748

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 259aa MW: 28697.4 Da PI: 5.4339

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009748	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.3e-34	112	169	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+ Cla009748 112 EDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHP 169 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-35	96	171	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-30	103	171	IPR003657	WRKY domain
PROSITE profile	PS50811	31.64	106	171	IPR003657	WRKY domain
SMART	SM00774	2.0E-39	111	170	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	112	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSDEMFKDLF YGGMDEYESL VRAFGESSDY SNNNNEISGT PINSCGSLSS SDAGAEEDDS 60 VKDKDKQIDK EHVEDGGESS KAGSGKSKKK GEKKEREARV AFMTKSEVDH LEDGYRWRKY 120 GQKAVKNSAY PRSYYRCTTQ KCGVKKRVER SFEDPSIVIT TYEGQHNHPV PTTLRGNLSA 180 ASSAFSPSML APMPVVGGIG FLPTELLSNS SSNNNQAING GASVYSHNNF DYTYNERQSE 240 YGLLQDIFPT PSSFFNRQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	101	171	7	77	Probable WRKY transcription factor 4
2lex_A	1e-29	101	171	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00168	DAP	Transfer from AT1G29860	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439664.1	1e-145	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-57	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A1S3AZZ5	1e-144	A0A1S3AZZ5_CUCME; probable WRKY transcription factor 71
STRING	XP_008439664.1	1e-144	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	9e-54	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]