PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009725
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26399.9 Da    PI: 10.1165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009725genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-311766150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cla009725 17 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
               79***********************************************8 PP
2K-box114.97.8e-38851814100
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sLs+k+L++Le++Lek++++iRskKnell+++ie+++k+e +l+++n+ Lr+k++e
  Cla009725  85 TNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAE 181
                3334499***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.132969IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42968IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-341086IPR002100Transcription factor, MADS-box
CDDcd002651.24E-451084No hitNo description
PROSITE patternPS0035001165IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-331131IPR002100Transcription factor, MADS-box
PfamPF003198.2E-271865IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-333146IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-334667IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2892179IPR002487Transcription factor, K-box
PROSITE profilePS5129715.34895185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSDSPQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG  60
RLYEYANNSV KATIDRYKKA SSDSTNTGST SEANTQFYQQ EAAKLRVQIG NLQNSNRNML  120
GESLSSLSVK DLRSLESKLE KGISRIRSKK NELLFAEIEY MRKREIDLHN NNQLLRAKIA  180
ESERNVNMMG GEFELMQSHP YDPRDFFQVN GLQHNHQYPR QDNMALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21981173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21981173Myocyte-specific enhancer factor 2B
1tqe_R2e-21981173Myocyte-specific enhancer factor 2B
1tqe_S2e-21981173Myocyte-specific enhancer factor 2B
6c9l_A2e-21981173Myocyte-specific enhancer factor 2B
6c9l_B2e-21981173Myocyte-specific enhancer factor 2B
6c9l_C2e-21981173Myocyte-specific enhancer factor 2B
6c9l_D2e-21981173Myocyte-specific enhancer factor 2B
6c9l_E2e-21981173Myocyte-specific enhancer factor 2B
6c9l_F2e-21981173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0223790.0AF022379.1 Cucumis sativus agamous-like putative transcription factor (CAG3) mRNA, complete cds.
GenBankAF0354380.0AF035438.1 Cucumis sativus MADS box protein CUM1 (CUM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022925702.11e-168floral homeotic protein AGAMOUS
RefseqXP_023544246.11e-168floral homeotic protein AGAMOUS-like
SwissprotQ435851e-127AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLO649581e-164O64958_CUCSA; CUM1
TrEMBLQ9SBK11e-165Q9SBK1_CUCSA; Agamous-like putative transcription factor
STRINGXP_008439700.11e-165(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]