PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009698
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 351aa    MW: 41424.4 Da    PI: 9.9305
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009698genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32105158255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtpeLH +Fv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Cla009698 105 PRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 158
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.825101161IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-30101159IPR009057Homeodomain-like
SuperFamilySSF466895.38E-15103159IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-23105160IPR006447Myb domain, plants
PfamPF002491.2E-9106157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNEPHHLQLM YCSNLLLNFR DRRKRSRSDE SEAAEEKLNP LMSRKWSSFD LNEEARVEEG  60
DDGMNIEEVE KNEERKYGNT STNNVNNSNN ARRTAVRQYV RSKVPRLRWT PELHLNFVHA  120
VQRLGGQERA TPKLVLQLMN VKGLSIAHVK SHLQMYRSKK LDQTGQVIRE ACNGLRLMHG  180
GGRYYNNNND RSMSVLLEQT THHSRYYPLT RHLRTTLLHS HSLYHPTPFR QVLEQKSRWS  240
HLGENRAWKN MRRMNDDDNN NNVSERNDDV KTIRELRMRG KYYWEEGPDV QVKKKEKREE  300
WDQPELELGL RHTIKTTTTT TKSSNRLEKE MRWGCGLQGD TEQITTDLSL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-18106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18106160357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-18106160458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818752e-44LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132622e-44LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658250.11e-127PREDICTED: myb-like protein H isoform X1
TrEMBLA0A0A0KHW11e-126A0A0A0KHW1_CUCSA; Uncharacterized protein
STRINGXP_008439737.11e-126(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-35G2-like family protein