PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 168aa MW: 19033.6 Da PI: 8.8123 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 45 | 103 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvP+G+grr+ k Cla009692 45 PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKP 103 68999**************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 44 | 102 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 47 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.351 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAEVHSSNTD GIKLFGTMIH LQTRKMKEEP EKGGGEGDET EMKRPEKIIP CPRCKSMDTK 60 FCYFNNYNVN QPRHFCKGCQ RYWTAGGALR NVPIGAGRRR TKPPPNCRTL SGELPEDYGQ 120 LYDAASGIIH QLELDAVEGW RLTLAEQDFS SVFPFKRRKI IGQHGQTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN684388 | 0.0 | LN684388.1 Cucumis melo genomic scaffold, unassembled_sequence31902. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008467024.1 | 1e-112 | PREDICTED: dof zinc finger protein DOF1.5-like | ||||
Swissprot | P68350 | 4e-49 | DOF15_ARATH; Dof zinc finger protein DOF1.5 | ||||
TrEMBL | A0A1S3CSQ8 | 1e-111 | A0A1S3CSQ8_CUCME; dof zinc finger protein DOF1.5-like | ||||
STRING | XP_008467024.1 | 1e-112 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6483 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 3e-49 | Dof family protein |
Publications ? help Back to Top | |||
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