PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009659
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 382aa    MW: 41806.1 Da    PI: 8.4129
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009659genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-1859119257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Cla009659  59 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKN 119
                89*****************99*************************************995 PP
2Wus_type_Homeobox111.73.8e-3658120264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
          Cla009659  58 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNK 120
                        689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1255123IPR009057Homeodomain-like
PROSITE profilePS5007110.57655120IPR001356Homeobox domain
SMARTSM003898.0E-957124IPR001356Homeobox domain
CDDcd000862.29E-858120No hitNo description
Gene3DG3DSA:1.10.10.604.2E-758126IPR009057Homeodomain-like
PfamPF000462.2E-1559118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HQWQHDINTN LSSSTATTCL RSAPYTTVGG CEERSPEPKP  60
RWNPKPEQIR ILEAIFNSGM VNPPRDEIRK IRAQLQEYGQ VGDANVFYWF QNRKSRSKNK  120
LRHVQNSKPN YNSQTATATA IVATAATTTA TCSSSSSSDK SSPKKPPIKT LSSNNSVTQN  180
YLQQPTSEVL PEPFFFPASQ IASAGGSGSC NLSQGFCFSE LCSVVQQVPE HGVGPCTSLL  240
LSEIMSPTEA LKKDLDQDKI NMVKLQPQFM NFHPSLTPTT TDHTLPQITI STPLTTLPSP  300
TNAIPQGLGE VCGVGQSCVG KSTVFINGVA FEVTSGPFNV REAFGDEAVL IHSNGQPVLT  360
NDWGLTLHSL QHGSYYYLLM RK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439789.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBLA0A1S3AZJ90.0A0A1S3AZJ9_CUCME; WUSCHEL-related homeobox 9-like isoform X1
STRINGXP_008439789.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-62homeobox-3