PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24355.7 Da PI: 9.8229 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.5 | 5.5e-32 | 46 | 186 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgy 82 lp+G++FhP+d++++ e+L++kv+g+k + + +++ +i++++P+ Lp +k++ + +fF++ +k+y+ g+rk+r++k + + Cla009648 46 LPAGVKFHPSDQQIL-EHLEAKVKGDKpkihplI---HqfipTLEGEdGICYTHPQYLP-GMKKDGEIRHFFHRPSKAYTAGTRKRRKVKteeeegrDTR 140 799**********99.99*********5554331...132223444435**********.666767777******************7333455444778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v g l+g kk+Lv+y g+ +k+ekt+W+mh+y+l Cla009648 141 WHKTGKTRPVGG--GGLMGFKKILVLYsnYGNPRKAEKTNWIMHQYHL 186 **********87..889**********6557999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-32 | 41 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.921 | 46 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 47 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEWLNEKKEG VWSWDAGNDA FGSRICPSCG HPVEGGFKVV EDWGRLPAGV KFHPSDQQIL 60 EHLEAKVKGD KPKIHPLIHQ FIPTLEGEDG ICYTHPQYLP GMKKDGEIRH FFHRPSKAYT 120 AGTRKRRKVK TEEEEGRDTR WHKTGKTRPV GGGGLMGFKK ILVLYSNYGN PRKAEKTNWI 180 MHQYHLGVTE QEKDGQWVAS KVFFQLHPRQ TN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 5e-81 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 5e-81 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439804.1 | 1e-109 | PREDICTED: NAC domain-containing protein 10 isoform X1 | ||||
Swissprot | F4HY61 | 4e-88 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A1S3AZ73 | 1e-108 | A0A1S3AZ73_CUCME; NAC domain-containing protein 10 isoform X1 | ||||
STRING | XP_008439804.1 | 1e-109 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 2e-79 | NAC domain containing protein 10 |