PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 23208 Da PI: 4.6888 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 7e-34 | 11 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++++++Pw+L+ k+ +e ++wyf+s++ r+t++gyW+ g+d +vls+ ++e+ Cla009439 11 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLNLFTYDPWELEGKALGEGNRWYFYSRKID--------VRVTDNGYWNPLGRDDPVLSTaTSEV 101 79*************************999.99**************977778899******9866........599****************9978899 PP NAM 100 vglkktLvfykgrapkge.ktdWvmheyrl 128 vg+kk + f+ ++a g kt+W+mheyrl Cla009439 102 VGMKKYFLFHVQDAAAGPlKTNWIMHEYRL 131 **********765555544*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-45 | 7 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.777 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 12 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAAADSQNFN LPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLNLFT YDPWELEGKA 60 LGEGNRWYFY SRKIDVRVTD NGYWNPLGRD DPVLSTATSE VVGMKKYFLF HVQDAAAGPL 120 KTNWIMHEYR LADTAAAAAS SSSSSRRRGR PKRDYSKWVL CRVYERDEEK EEEEDGAELS 180 CLDEVFLTLD DLDEISLPNR IQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-34 | 8 | 172 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 153 | RRGRPKRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 2e-92 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 2e-92 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455246.1 | 1e-117 | PREDICTED: NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 6e-83 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1S3C0L6 | 1e-116 | A0A1S3C0L6_CUCME; NAC domain-containing protein 104 | ||||
STRING | XP_008455246.1 | 1e-117 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-76 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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