PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009422

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 299aa MW: 33178 Da PI: 7.3664

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009422	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.6	3.9e-65	88	230	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq + +++ ++++ +skr++++ q l + ++ le+ Cla009422 88 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRHHILQHHHPQSDHITSKRHQQN----QPPLPIPT-----LTSGLEV 178 5789*********************************************9999987766555555555554443....33333333.....3445899 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P+e +s+avfrcv+vs++d+ ee+laYqt+v+igGh+fkGiLyd+G+e+ Cla009422 179 AHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPES 230 9***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.8E-62	90	229	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.0E-26	92	134	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.2E-25	180	228	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKGLLYLAGK QEEDEEEMMR GREQELFLYG KNNNEEMYSK GLEIWPQQNV ENYISFGVGP 60 TRRNLIINAS DHEFVSRLGF SMMRGGGGGG MNCQDCGNQA KKDCSHLRCR TCCKSRGFQC 120 QTHVKSTWVP AAKRRERQQQ RHHILQHHHP QSDHITSKRH QQNQPPLPIP TLTSGLEVAH 180 FPAEFNSPAV FRCVKVSAID NVEEQLAYQT SVNIGGHMFK GILYDHGPES SQNTSVGGES 240 SYCHSGEDGG QALDLVIGAS NGGGRVNQSS SAAFVESSLY PIPINTFSTG TQFFPSTRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	1e-133	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	1e-133	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137039.1	1e-160	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	5e-73	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A0A0K1X2	1e-158	A0A0A0K1X2_CUCSA; Uncharacterized protein
STRING	XP_004137039.1	1e-159	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-58	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]