PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009269
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 664aa    MW: 73554.5 Da    PI: 6.2052
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009269genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.48e-29217270155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Cla009269 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270
                79*******************.********************************8 PP
2Response_reg731.2e-24391471109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++  y  v+ +  +e al +l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a + ++ + + +  Ga 
     Cla009269  39 VLVVDDDPTCLRILEKMLQNCCY-AVTKCNRAEIALSMLRENKngYDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHGAC 133
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l++
     Cla009269 134 DYLIKPVRIEALRN 147
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-17119654IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.7E-4136182No hitNo description
SuperFamilySSF521722.99E-3436160IPR011006CheY-like superfamily
SMARTSM004481.8E-2737149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.37938153IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2239147IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-2540152No hitNo description
SuperFamilySSF466893.58E-20214274IPR009057Homeodomain-like
PROSITE profilePS5129411.048214273IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-30216275IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-25217270IPR006447Myb domain, plants
PfamPF002499.5E-8219269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDLSHMKGSM PMPMPTPTSI SARKSTDMVS DQFPAGLRVL VVDDDPTCLR ILEKMLQNCC  60
YAVTKCNRAE IALSMLRENK NGYDIVLSDV HMPDMDGFKL LEQVGLEMDL PVIMMSADDG  120
KNVVMKGVIH GACDYLIKPV RIEALRNIWQ HVVRKRKTEW KDLEQSGSVD DGDREQNLSE  180
GANYSSSAYE GSWNSSKRRR DAEEEPEERD DTSTLKKPRV VWSVELHQQF VAAVNQLGID  240
KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRLSGVSP HQSNLNNSFI NPQDPPYGSM  300
ASFNGIDLQT LSVTGQLSPQ SLAALQATGL HRPTAKSSIS MALVDQNNIF SFENPKLRFV  360
EDQTQHLNNS KPVNLFHGIP TKMEPKQLAN MQHPSVQSQG NINMQLNIKS EHGGTQLMHL  420
SQHQTVGQTL SNSPASHLRK PIVSGNVTRG NGTADNSHRS GYNLVSPTSV MVNYPMSQTT  480
ELSNNFSLQS NSSVSTLTCK GVFQEEISSD LKVSGGLMLS YDVFSDLHLQ KSHDWDSQNV  540
STLAFGNSHH GNFIQDSFDI PPSTLIHHGF PSSQTNGQNQ NSSVIGKTIF SFADSTQPEN  600
PQSIAQNSLL DPVEVKTQRI PDASYQTDLL SEDFGQDELL GVFLKQQQQG DNGSVGYQTE  660
NICV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22216276464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150083.10.0PREDICTED: two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ91e-173ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0A0KF030.0A0A0A0KF03_CUCSA; Two-component response regulator
STRINGXP_004161384.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-166response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]