PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009267
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 138aa    MW: 15021 Da    PI: 10.3915
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009267genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-192963135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Cla009267 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 63
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-132381IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792359IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-132562No hitNo description
Gene3DG3DSA:3.30.50.108.7E-162763IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.23E-132879No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003204.1E-172963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMDPIEEGSE FKDAGKSWPA ENEQNKKACA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK  60
KRRSLLGLNR GGEVERKNKG SSNRSNNGGG NQAKIGGESL KWRSMAFGRK ELMQRRQLGE  120
EEQAAVLLMA LSYGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819241e-122LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132651e-122LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022138518.17e-86GATA transcription factor 16-like
SwissprotQ8LG102e-36GAT15_ARATH; GATA transcription factor 15
SwissprotQ9FJ101e-36GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0A0KG768e-72A0A0A0KG76_CUCSA; Uncharacterized protein
STRINGXP_004161386.11e-72(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-29GATA transcription factor 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]