PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009260

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

CAMTA

Protein Properties

Length: 905aa MW: 102245 Da PI: 8.0366

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009260	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.6	4.1e-52	35	150	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 e ++rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ve +++yYah+ +nptf rrcywlL Cla009260 35 EaSSRWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLL 134 4589********************************************************************************************** PP CG-1 103 eeelekivlvhylevk 118 +++le+ivlvhy+e++ Cla009260 135 DKTLEHIVLVHYRETQ 150 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.038	29	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.6E-74	32	150	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.0E-46	35	148	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.7E-8	346	459	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.71E-16	370	457	IPR014756	Immunoglobulin E-set
CDD	cd00102	1.07E-4	371	457	No hit	No description
Pfam	PF01833	3.1E-7	371	456	IPR002909	IPT domain
CDD	cd00204	6.07E-17	532	666	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.0E-17	555	669	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.6E-7	556	636	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.79E-19	569	669	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.157	574	666	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.781	607	639	IPR002110	Ankyrin repeat
SMART	SM00248	5.5E-5	607	636	IPR002110	Ankyrin repeat
SMART	SM00248	1600	646	675	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.86E-5	715	821	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	320	717	739	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.504	718	747	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.595	755	781	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	64	770	792	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	771	798	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.028	793	815	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	794	818	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.015	796	815	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.4	871	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.718	873	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MSLPMRADVQ GSLVGSEIHG FHTLQDLDVK NIREEASSRW LRPNEIHAIL CNYKYFTIHV 60 KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG 120 LDNPTFVRRC YWLLDKTLEH IVLVHYRETQ ESSPSTSMNS NSGSVSNPST PWLLSEELDS 180 RATHVYSVGE NELPEPSDTT TVMTHEQRLH EINTLEWDDL LVTDEPFKPA MPKGGKLSCF 240 DQQNQVPINA TDNLLGEMSS FNNPVEPTGR VNGNISFTGS ANLSLGGQTN LNVEKSESIP 300 VNSLDSLLNE GLQSQDSFGR WINEVITDSS GSVIDPAIEP SISSVDSVHN SYCDSTLYHH 360 QTSAMEQIFN ITDVSPAWAF STEKTKILII GYFHNDYVHL AKSSILVVCG DTSVNVDFVQ 420 PGVFRCLVPP HSPGLVHLYV SLDGHKPISQ ALNFEYRAPN LQVPVVASEQ IQKWEEFQVQ 480 MRLAHLLFST SRILSIMSTK LSPIALLEAK KLAVKTSDIS DSWIYLLKSI TENRTPFQQA 540 REGVLEIILR ARLREWLIEK VAEGSKKSTE FDVNGQGVIH LCAILGYTWA VHPFVWSGLS 600 INFRDKSGWT ALHWAAYYGR EKMVAVLLSV GARPNVVTDP TAKNPEGCTA ADLASMNGYD 660 GLAAYLSEKA LVSHFEEMSL AGNVSGSLDT SSTITDASDC ISEEQMYMKE TLAAYRTAAD 720 AAARIQAAFR EHSLKQRTNA IEFSTPEAEA RGIIAAMKIQ HAFRNFETRK KMAAAARIQY 780 RFRTWKIRKD FLNMRRQTIR IQAAFRGFQV RRQYRKIVWS VGVLEKAILR WRLKRKGFRG 840 LQVAPAEELT KLEVGIEEDF YRVSQKQAEE RVERAVIRVQ AMFRSKKAQE EYRRMRLTYD 900 EAAVS

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MSLPMRADVQ GSLVGSEIHG FHTLQDLDVK NIREEASSRW LRPNEIHAIL CNYKYFTIHV  60
KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG  120
LDNPTFVRRC YWLLDKTLEH IVLVHYRETQ ESSPSTSMNS NSGSVSNPST PWLLSEELDS  180
RATHVYSVGE NELPEPSDTT TVMTHEQRLH EINTLEWDDL LVTDEPFKPA MPKGGKLSCF  240
DQQNQVPINA TDNLLGEMSS FNNPVEPTGR VNGNISFTGS ANLSLGGQTN LNVEKSESIP  300
VNSLDSLLNE GLQSQDSFGR WINEVITDSS GSVIDPAIEP SISSVDSVHN SYCDSTLYHH  360
QTSAMEQIFN ITDVSPAWAF STEKTKILII GYFHNDYVHL AKSSILVVCG DTSVNVDFVQ  420
PGVFRCLVPP HSPGLVHLYV SLDGHKPISQ ALNFEYRAPN LQVPVVASEQ IQKWEEFQVQ  480
MRLAHLLFST SRILSIMSTK LSPIALLEAK KLAVKTSDIS DSWIYLLKSI TENRTPFQQA  540
REGVLEIILR ARLREWLIEK VAEGSKKSTE FDVNGQGVIH LCAILGYTWA VHPFVWSGLS  600
INFRDKSGWT ALHWAAYYGR EKMVAVLLSV GARPNVVTDP TAKNPEGCTA ADLASMNGYD  660
GLAAYLSEKA LVSHFEEMSL AGNVSGSLDT SSTITDASDC ISEEQMYMKE TLAAYRTAAD  720
AAARIQAAFR EHSLKQRTNA IEFSTPEAEA RGIIAAMKIQ HAFRNFETRK KMAAAARIQY  780
RFRTWKIRKD FLNMRRQTIR IQAAFRGFQV RRQYRKIVWS VGVLEKAILR WRLKRKGFRG  840
LQVAPAEELT KLEVGIEEDF YRVSQKQAEE RVERAVIRVQ AMFRSKKAQE EYRRMRLTYD  900
EAAVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	0.0	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008458373.1	0.0	PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S3C8Z3	0.0	A0A1S3C8Z3_CUCME; LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
STRING	XP_008458373.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]