PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009096
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 264aa    MW: 27651.8 Da    PI: 10.4014
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009096genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.16.4e-3844125274
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........e 74 
                a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++          
  Cla009096  44 AVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStisaslrgaP 125
                78**************************************************************999997774322222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.99250104IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3250130IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSGSDGVNNN NGAIIDHSQQ QRHHQQQQQQ QLQGNQSNNN GALAVKKPPS KDRHSKVDGR  60
GRRIRMPIVC AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTISAS  120
LRGAPAAASS SSSSLDHKPL LAPAPFILGK RVRTDDDGAN KDDGGGISVG PTIGSIMGPA  180
AAGGYWAIPA RSDFGQVWSF AAAAPEMVIQ PTAVSHQASL FVQQQSMGEA SAAKVGNYLP  240
GHLNLLASLS GGPGSSVRRD NDHR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818941e-171LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBankLN7132631e-171LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149871.11e-148PREDICTED: transcription factor TCP21
SwissprotQ9FMX29e-92TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A0KMY31e-147A0A0A0KMY3_CUCSA; Uncharacterized protein
STRINGXP_004149871.11e-148(Cucumis sativus)
STRINGXP_004166070.11e-148(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-61TCP family protein