PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25230.9 Da PI: 4.5349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 26 | 74 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++l+g Cla009063 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAAIAYDRAARSLRG 74 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.468 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-34 | 25 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.05E-29 | 25 | 81 | No hit | No description |
PRINTS | PR00367 | 3.5E-8 | 26 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-21 | 26 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-28 | 26 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-11 | 28 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSPSPSKPKR KQQPPPPPAE PTPHRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE 60 AAIAYDRAAR SLRGSLARTN FLYSDSPPPP PPPSSASIYP DQPPLFLPLL QPPPPPLFHQ 120 FPPAGDSPSG IFSGECDGGA ELPPFPPAIS SESENCDYNY NYNYGLMESQ NVGFECFDQS 180 SIGIEACLGF DSSSEYVHNP MYGSMPAVSD AGAADFQSPA ANFYFPPSSD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 25 | 81 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151396.1 | 1e-106 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1S3AU89 | 1e-102 | A0A1S3AU89_CUCME; ethylene-responsive transcription factor LEP | ||||
STRING | XP_004151396.1 | 1e-105 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-22 | ERF family protein |