PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008940

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WOX

Protein Properties

Length: 279aa MW: 31887.6 Da PI: 6.2882

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008940	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.5e-22	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cla008940 100 RQRWTPTPVQLQILERIFEQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	100	1.8e-32	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq Cla008940 99 SRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-19	94	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.418	96	161	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-20	96	164	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-16	98	165	IPR001356	Homeobox domain
CDD	cd00086	5.37E-15	100	162	No hit	No description
Pfam	PF00046	9.3E-20	100	160	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MMEWEKPEQQ NPYHHQNPPL RDDHLHHLTG TTAGALYVKV MTDEQLETLR KQIAVYATIC 60 EQLVEMHKTL TAHQDLTGMR LGNMYCEPLM TSSSHKITSR QRWTPTPVQL QILERIFEQG 120 NGTPSKQKIK EITSELGQHG QISESNVYNW FQNRRARSKR KQQSTAPAYG ESEVETEVES 180 PKDKKTKPVD FQTHQSSAPL GDDMCFQSPE MSSELHFLDP NTNKADTLFP SNGSLKTARS 240 FSQMSFYEAG NEQLAGKIET PETYSLYQQA EGYSMTERP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022923431.1	0.0	WUSCHEL-related homeobox 13-like isoform X1
Swissprot	O81788	6e-87	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0A0L4U3	0.0	A0A0A0L4U3_CUCSA; Uncharacterized protein
STRING	XP_004146172.1	0.0	(Cucumis sativus)
STRING	XP_004159737.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-89	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]