PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla008917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 208aa MW: 22863.5 Da PI: 10.585 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.5 | 1.9e-15 | 138 | 188 | 4 | 54 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++r++r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +L+ + eel+ Cla008917 138 DRRQKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARLRRQQEELRA 188 79*****************************************99999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-15 | 129 | 188 | No hit | No description |
SMART | SM00338 | 2.0E-13 | 135 | 199 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.576 | 137 | 187 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-13 | 139 | 187 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.88E-12 | 139 | 188 | No hit | No description |
CDD | cd14707 | 1.80E-27 | 139 | 193 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 142 | 157 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MEEVWKDINL SSLHSRSDHD FSAAAAAPAT PIGLHHHSAA ANFRHIILQD FLSSSTSKLD 60 SSSAATAAAV AAPPPTVLSL NSTRELHFPD NAVAAAHFRH QDPASVSAAF HSPFDQVLGP 120 PPFGKKRVPD SDSNNSGDRR QKRMIKNRES AARSRARKQA YTNELELEVA HLMEENARLR 180 RQQEELRAAA TAQVPRKHRL QRTSTAPF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 3e-79 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 3e-79 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022923339.1 | 1e-103 | protein FD | ||||
Swissprot | Q84JK2 | 9e-49 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1S3BJW5 | 4e-90 | A0A1S3BJW5_CUCME; protein FD | ||||
STRING | XP_008448521.1 | 7e-91 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35900.1 | 6e-41 | bZIP family protein |