PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008833

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 243aa MW: 26559.2 Da PI: 9.6579

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008833	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	83	136	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cla008833 83 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 136 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.06E-16	80	136	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-29	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	83	136	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	84	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAGGPGFHRH LHDLHPQGLG FLRPIRGIPV YQNPPSSSSS SSSSSYPIFG GSGGGGSGSH 60 FSYNGLRSRF LARFPAKRSI RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK 120 DLTLAHVKSH LQMYRTVKTT DRAAAAASSG NSEDIYDQNG SSGDTTNEDT TYENEKSSRM 180 RLDAPTGDPM THGIRQTVVG GQDHHRSHKD FHALWSNSSS REALFQGIPN DSSENQPSQL 240 DQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	84	138	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682076	6e-93	LN682076.1 Cucumis melo genomic scaffold, unanchored_scaffold00308.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150668.1	1e-140	PREDICTED: probable transcription factor KAN2 isoform X1
TrEMBL	A0A0A0L171	1e-137	A0A0A0L171_CUCSA; Uncharacterized protein
STRING	XP_004150668.1	1e-140	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-50	G2-like family protein